This is a continuation of the last thread which is getting a little unwieldy. The emails cover a 13 year period in which many things happened, and very few people are up to speed on some of the long-buried issues. So to save some time, I’ve pulled a few bits out of the comment thread that shed some light on some of the context which is missing in some of the discussion of various emails.

• Trenberth: You need to read his recent paper on quantifying the current changes in the Earth’s energy budget to realise why he is concerned about our inability currently to track small year-to-year variations in the radiative fluxes. 
  
• Wigley: The concern with sea surface temperatures in the 1940s stems from the paper by Thompson et al (2007) which identified a spurious discontinuity in ocean temperatures. The impact of this has not yet been fully corrected for in the HadSST data set, but people still want to assess what impact it might have on any work that used the original data.
• Climate Research and peer-review: You should read about the issues from the editors (Claire Goodess, Hans von Storch) who resigned because of a breakdown of the peer review process at that journal, that came to light with the particularly egregious (and well-publicised) paper by Soon and Baliunas (2003). The publisher’s assessment is here.

Update: Pulling out some of the common points being raised in the comments.

• HARRY_read_me.txt. This is a 4 year-long work log of Ian (Harry) Harris who was working to upgrade the documentation, metadata and databases associated with the legacy CRU TS 2.1 product, which is not the same as the HadCRUT data (see Mitchell and Jones, 2003 for details). The CSU TS 3.0 is available now (via ClimateExplorer for instance), and so presumably the database problems got fixed. Anyone who has ever worked on constructing a database from dozens of individual, sometimes contradictory and inconsistently formatted datasets will share his evident frustration with how tedious that can be.
• “Redefine the peer-reviewed literature!” . Nobody actually gets to do that, and both papers discussed in that comment – McKitrick and Michaels (2004) and Kalnay and Cai (2003) were both cited and discussed in Chapter 2 of the IPCC AR4 report. As an aside, neither has stood the test of time.
• “Declines” in the MXD record. This decline was hidden written up in Nature in 1998 where the authors suggested not using the post 1960 data. Their actual programs (in IDL script), unsurprisingly warn against using post 1960 data. Added: Note that the ‘hide the decline’ comment was made in 1999 – 10 years ago, and has no connection whatsoever to more recent instrumental records.
• CRU data accessibility. From the date of the first FOI request to CRU (in 2007), it has been made abundantly clear that the main impediment to releasing the whole CRU archive is the small % of it that was given to CRU on the understanding it wouldn’t be passed on to third parties. Those restrictions are in place because of the originating organisations (the various National Met. Services) around the world and are not CRU’s to break. As of Nov 13, the response to the umpteenth FOI request for the same data met with exactly the same response. This is an unfortunate situation, and pressure should be brought to bear on the National Met Services to release CRU from that obligation. It is not however the fault of CRU. The vast majority of the data in the HadCRU records is publicly available from GHCN (v2.mean.Z).
• Suggestions that FOI-related material be deleted … are ill-advised even if not carried out. What is and is not responsive and deliverable to an FOI request is however a subject that it is very appropriate to discuss.

Further update: This comment from Halldór Björnsson of the Icelandic Met. Service goes right to the heart of the accessibility issue:

Re: CRU data accessibility.
National Meteorological Services (NMSs) have different rules on data exchange. The World Meteorological Organization (WMO) organizes the exchange of “basic data”, i.e. data that are needed for weather forecasts. For details on these see WMO resolution number 40 (see http://bit.ly/8jOjX1).

This document acknowledges that WMO member states can place restrictions on the dissemination of data to third parties “for reasons such as national laws or costs of production.” These restrictions are only supposed to apply to commercial use, the research and education community is supposed to have free access to all the data.

Now, for researchers this sounds open and fine. In practice it hasn’t proved to be so.
Most NMSs also can distribute all sorts of data that are classified as “additional data and products”. Restrictions can be placed on these. These special data and products (which can range from regular weather data from a specific station to maps of rain intensity based on satellite and radar data). Many nations do place restrictions on such data (see link for additional data on above WMO-40 webpage for details).

The reasons for restricting access is often commercial, NMSs are often required by law to have substantial income from commercial sources, in other cases it can be for national security reasons, but in many cases (in my experience) the reasons simply seem to be “because we can”.
What has this got to do with CRU? The data that CRU needs for their data base comes from entities that restrict access to much of their data. And even better, since the UK has submitted an exception for additional data, some nations that otherwise would provide data without question will not provide data to the UK. I know this from experience, since my nation (Iceland) did send in such conditions and for years I had problem getting certain data from the US.

The ideal, that all data should be free and open is unfortunately not adhered to by a large portion of the meteorological community. Probably only a small portion of the CRU data is “locked” but the end effect is that all their data becomes closed. It is not their fault, and I am sure that they dislike them as much as any other researcher who has tried to get access to all data from stations in region X in country Y.

These restrictions end up by wasting resources and hurting everyone. The research community (CRU included) and the public are the victims. If you don’t like it, write to you NMSs and urge them to open all their data.

I can update (further) this if there is demand. Please let me know in the comments, which, as always, should be substantive, non-insulting and on topic.